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PhotosynQ | Website Update

As we get ready to release the MultispeQ v1.0 we have been working hard in the background to provide an improved user experience. This includes visible changes, as well as a lot of changes in the background. Over the last couple of months we have updated the website, adding and updating features. Here is a brief summary of the biggest changes to https://photosynq.org.

1. Search

Now you can search not only through Projects, but also through Protocols, Macros, Discussions and Users. The searchable content is scored, so we can hopefully provide more relevant search results at the top of the list for you.
Further you can filter your search results for Projects, Protocols and Macros by their associated category.
Go to https://photosynq.org/search to try it out.

2. Discover

If you are new to PhotosynQ or you don’t know what to search for, take a look at the improved Discover page. Now you can browse Projects, Protocols, Macros and Users, and filter the results by category.
Go to https://photosynq.org/discover and get inspired by the work of others.

3. Help Getting Started

We have added a lot of content that we hope will help users get started with PhotosynQ and collect quality data. This content includes new and updated tutorials, a help center, and frequently asked questions.

A. Tutorials

Over the summer we started to make some new tutorial videos, helping you to get started with the platform and the new MultispeQ v1.0 instrument. We added some advanced tutorials on how to create a measurement Protocol, a Macro and how to do a basic analysis outside the platform, using R. Also, check out the ‘further information’ sidebar for downloadable pdf tutorials.
Go to https://photosynq.org/tutorials to see what we recorded for you.

B. Help Center

Along with providing more detailed tutorials, we have added a new help center that will guide you through: managing your account settings, creating a project, viewing your data, creating and editing protocols and macro’s and much more. We have also moved the blog over to the ‘learn more’ tab of the menu bar and replaced it with a link to the help center.

Changes in the navigation menu

C. Frequently Asked Questions

We often get asked questions directly by email and not through the forum. Because of that, we have started a collection of the most frequent and pressing questions. Over time we will add more questions and answers. Go to https://photosynq.org/faq to check out what we have gathered so far.

4. Data Viewer

We worked on the Data Viewer, improving existing features and adding new ones including adding thresholds and adding custom data in addition to the measurements you have already submitted.

Plotting data in the data viewer

  1. Now you can use create plots with up to four dimensions, adding marker size and marker color. The second y-axis has proven to be less helpful has been removed.
  2. Thresholds allow you to look into a subset of data, after you have filtered your dataset into different series. You can select thresholds for one or multiple parameters.
  3. The parameters are now sorted into Primary Parameters, Project Questions, Custom Parameters (if available) and Advanced Parameters, making it easier to find the parameter you are interested in among the many provided. Furthermore, this order of the parameters applies now to the columns in the spreadsheet view as well.
  4. New range sliders and a calendar are available to allow you to select a specific time and date range more precisely, especially when you have long term projects, or a lot of data over a short period of time.
  5. If you are looking at a single measurement, you can now easily navigate to the next / previous one. The small map indicating the measurement location now shows a bigger section with topography as well as latitude and longitude.
  6. New data types can be used, allowing you to display arrays as sparklines when you are looking at a single measurement. Furthermore, colors can now be defined as hexadecimal, RGB and RGBa, allowing you to use them as coloration in your plots or for your map.

5. Additional Data

Some experiments are going beyond data collection in the field with the MultispeQ or other instruments. Now you can add more information to each measurement after you took them (e.g. yield), as long as you are the project lead. This data is kept separate from the original measurements and can be altered at any time, in case you want to change, remove or add information.

additional data upload

6. User Activity

Previously, your user profile mainly presented a number of stats about your activity on PhotosynQ and the Projects you are involved in, either as a Project Lead or a Collaborator. Now we have an Activity feed, which displays the last 100 important events relevant to you on PhotosynQ. You can see if others contributed to your Project, if somebody posted a comment or question to one of the Projects you are involved in and of course everything you did, so you can more easily navigate to what is important for your workflow.

7. In the Background

One of the biggest changes is the work done in the background. Before the update, the original data for a Project was loaded into the Data Viewer and processed on your computer. Now, we do this step on our server and send you only the results from the calculations. As a result, the amount of data sent to you is reduced to 10–15% of its original size, allowing faster access to Project results.
Updating the calculations for a parameter? No problem, since your data gets re-analyzed when you view it after the changes, so you are always up to date.

CoralspeQ Beta, The next generation — a short update

CoralspeQ new boards
New boards!

We have just received the brand new boards!  We have been working on this since last year.  It took longer than we anticipated, because both Dave and I kept adding the features (“we want a laser,” “more LEDs,” “we need longer wavelengths,” “I found this cool LED. Can you use it?” & etc.).  I truly appreciate the patience of Robert and Chris.  We surfed through the wave of holidays, and finally, the initial trial electronics boards are here.

The new board is largely modified from the MultispeQ V.1 board, and the idea is that it will be used not only for the CoralspeQ, but also for other instruments currently under development. GrainspeQ is one of them.

It will still take time to build a complete CoralspeQ Beta. I hope I could update again soon.

Production Update

I was hoping to have more specific information for you guys before creating this post, but we need to provide an update either way.  Here’s the update:

  • The bluetooth module was mis-shipped again (yep, not kidding).  So we managed to find a local supplier.  This time we confirmed it’s the right part by ordering it and installing and testing it first.  The expected delivery date for the full quantity we need is Feb 10th.
  • We are waiting on a response from the factory on when we fit into their schedule once those modules are delivered.  We have been planning on late January, so they’ll need to adjust their schedule to get us in in mid February instead.
  • Everything else is in place to fulfill all of the pre-orders.  Specifically, we have:
    • All parts except the bluetooth module
    • Factory calibration process for each device
    • Factory Assembly instructions
    • Other packaging (instructions, box, etc.)
    • Confirmed precision and range of key measurements on a a subset of 10 – 15 devices
    • Updated website and android app

As soon as we begin manufacturing, I’ll update the blog again with details, progress and pictures.

Thanks everyone for your patience and support.

MultispeQ v1.0 up close

MultispeQ v1.0 Workshop

Learn the MultispeQ v1.0 and the PhotosynQ platform.

This is a 3 day intensive workshop to learn and share best practices, experimental design, data analysis, and hardware modification on devices in the PhotosynQ platform with a focus on the MultispeQ v1.0 device.

  • Dates: Oct 14 – 16, 2016
  • Location: East Lansing MI

We already have a great group of attendees with backgrounds in plant breeding, plant science, arboriculture, and citizen science from academia and the private sector.  Join us!

To keep the workshop small and personal, tickets are limited so sign up soon.

Sign up now!

PhotosynQ Workshop details + videos

We had our first PhotosynQ day-long workshop on April 22nd at Michigan State. We had over 90 attendees, 9 breakout sessions ranging from education to data analysis, and posters from 12 beta testers.  You can see almost all of the main and breakout sessions on our YouTube Channel.

We discussed everything from abiotic stress, what photosynthesis parameters mean (there’s a nice overview by Professor David Kramer in there which I’d suggest), the new features coming in the MultispeQ V1.0, alternative uses of the platform for microbial detection and measuring coral bleaching, use of the MultispeQ in Africa, and lots lots more.  Definitely check it out!